The Drown Lab has been awarded a two year grant to engage undergraduate researchers using new genomic technology to explore the Alaska soil microbiome. We’ll be traveling across the state and working with undergraduates using the latest Nanopore sequencing devices (MinIONs).
Maddie McCarthy has been working for the past year in the lab exploring the presence of antibiotic resistance in microbes found in environmental samples. This week she presented her work finding widespread antibiotic resistance in a Fairbanks permafrost thaw gradient.
She used a combination of techniques including traditional culturing methods and antibiotic screening as well as nanopore sequencing to explore the resistome. She has just started comparing her sequencing data with the Comprehensive Antibiotic Resistance database.
Maddie’s work was supported by Alaska BLaST who is funded by the National Institute Of General Medical Sciences of the National Institutes of Health under Award Numbers UL1GM118991, TL4GM118992, or RL5GM118990.
Making cultures like mad, Madison is hard at work in the West Ridge Research Building (WRRB). As a junior, Madison has over a year to see her project to completion. Way to go, Maddie!
Maddie, Anastasia, and Devin attended the 9th annual University of Alaska Biomedical Research Conference (UA-BRC). For the undergraduates, this was their first research conference and they presented their work using the MinION nanopore sequencer to explore genomics. As you can see below, they drew a crowd to their poster.
This two-day conference showcased biomedical and One Health related research from graduate students, undergraduate students, researchers, and faculty through-out Alaska in the form of oral presentations and poster sessions. There were two workshops about career issues relevant to undergraduate and graduate student training including internship opportunities, STEM student recruitment, networking, entrepreneurship/innovation, and employer expectations.
Undergraduate researcher Maddie McCarthy was recently awarded a BLaST Undergraduate Research Experience. Maddie will have a completely funded summer of research ahead of her. She’ll be digging into the soil microbial communities of the Fairbanks Permafrost Experimental Station. Continue reading Identification antibiotic resistance in the microbial communities of a Fairbanks permafrost gradient